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The continued growth in the processing power of FPGAs coupled with high bandwidth memories (HBM), makes systems like the Xilinx U280 credible platforms for linear solvers which often dominate the run time of scientific and engineering applications. In this paper, we present Callipepla, an accelerator for a preconditioned conjugate gradient linear solver (CG). FPGA acceleration of CG faces three challenges: (1) how to support an arbitrary problem and terminate acceleration processing on the fly, (2) how to coordinate long-vector data flow among processing modules, and (3) how to save off-chip memory bandwidth and maintain double (FP64) precision accuracy. To tackle the three challenges, we present (1) a stream-centric instruction set for efficient streaming processing and control, (2) vector streaming reuse (VSR) and decentralized vector flow scheduling to coordinate vector data flow among modules and further reduce off-chip memory access latency with a double memory channel design, and (3) a mixed precision scheme to save bandwidth yet still achieve effective double precision quality solutions. To the best of our knowledge, this is the first work to introduce the concept of VSR for data reusing between on-chip modules to reduce unnecessary off-chip accesses and enable modules working in parallel for FPGA accelerators. We prototype the accelerator on a Xilinx U280 HBM FPGA. Our evaluation shows that compared to the Xilinx HPC product, the XcgSolver, Callipepla achieves a speedup of 3.94×, 3.36× higher throughput, and 2.94× better energy efficiency. Compared to an NVIDIA A100 GPU which has 4× the memory bandwidth of Callipepla, we still achieve 77% of its throughput with 3.34× higher energy efficiency. The code is available at https://github.com/UCLA-VAST/Callipepla. 

Technological advances in long read sequences have greatly facilitated the development of genomics. However, managing and analyzing the raw genomic data that outpaces Moore's Law requires extremely high computational efficiency. On the one hand, existing software solutions can take hundreds of CPU hours to complete human genome alignment. On the other hand, the recently proposed hardware platforms achieve low processing throughput with significant overhead. In this paper, we propose PARC, an Processing-in-Memory architecture for long read pairwise alignment leveraging emerging resistive CAM (content-addressable memory) to accelerate the bottleneck chaining step in DNA alignment. Chaining takes 2-tuple anchors as inputs and identifies a set of correlated anchors as potential alignment candidates. Unlike traditional main memory which organizes relational data structure in a linear address space, PARC stores tuples in two neighboring crossbar arrays with shared row decoder such that column-wise in-memory computational operations and row-wise memory accesses can be performed in-situ in a symmetric crossbar structure. Compared to both software tools and state-of-the-art accelerators, PARC shows significant improvement in alignment throughput and energy efficiency, thanks to the in-site computation capability and optimized data mapping. 

Deep learning is the core of artificial intelligence and it achieves state-of-the-art in a wide range of applications. The intensity of computation and data in deep learning processing poses significant challenges to the conventional computing platforms. Thus, specialized accelerator architectures are proposed for the acceleration of deep learning. In this paper, we classify the design space of current deep learning accelerators into three levels, (1) processing engine, (2) memory and (3) accelerator, and present a constructive view from a perspective of parallelism in the three levels. 

Deep neural network (DNN) accelerators as an example of domain-specific architecture have demonstrated great success in DNN inference. However, the architecture acceleration for equally important DNN training has not yet been fully studied. With data forward, error backward and gradient calculation, DNN training is a more complicated process with higher computation and communication intensity. Because the recent research demonstrates a diminishing specialization return, namely, “accelerator wall”, we believe that a promising approach is to explore coarse-grained parallelism among multiple performance-bounded accelerators to support DNN training. Distributing computations on multiple heterogeneous accelerators to achieve high throughput and balanced execution, however, remaining challenging. We present ACCPAR, a principled and systematic method of determining the tensor partition among heterogeneous accelerator arrays. Compared to prior empirical or unsystematic methods, ACCPAR considers the complete tensor partition space and can reveal previously unknown new parallelism configurations. ACCPAR optimizes the performance based on a cost model that takes into account both computation and communication costs of a heterogeneous execution environment. Hence, our method can avoid the drawbacks of existing approaches that use communication as a proxy of the performance. The enhanced flexibility of tensor partitioning in ACCPAR allows the flexible ratio of computations to be distributed among accelerators with different performances. The proposed search algorithm is also applicable to the emerging multi-path patterns in modern DNNs such as ResNet. We simulate ACCPAR on a heterogeneous accelerator array composed of both TPU-v2 and TPU-v3 accelerators for the training of large-scale DNN models such as Alexnet, Vgg series and Resnet series. The average performance improvements of the state-of-the-art “one weird trick” (OWT) and HYPAR, and ACCPAR, normalized to the baseline data parallelism scheme where each accelerator replicates the model and processes different input data in parallel, are 2.98×, 3.78×, and 6.30×, respectively. 

Deep neural networks (DNNs) emerge as a key component in various applications. However, the ever-growing DNN size hinders efficient processing on hardware. To tackle this problem, on the algorithmic side, compressed DNN models are explored, of which block-circulant DNN models are memory efficient and hardware-friendly; on the hardware side, resistive random-access memory (ReRAM) based accelerators are promising for in-situ processing of DNNs. In this work, we design an accelerator named ReBoc for accelerating block-circulant DNNs in ReRAM to reap the benefits of light-weight models and efficient in-situ processing simultaneously. We propose a novel mapping scheme which utilizes Horizontal Weight Slicing and Intra-Crossbar Weight Duplication to map block-circulant DNN models onto ReRAM crossbars with significant improved crossbar utilization. Moreover, two specific techniques, namely Input Slice Reusing and Input Tile Sharing are introduced to take advantage of the circulant calculation feature in block- circulant DNNs to reduce data access and buffer size. In REBOC, a DNN model is executed within an intra-layer processing pipeline and achieves respectively 96× and 8.86× power efficiency improvement compared to the state-of-the-art FPGA and ASIC accelerators for block-circulant neural networks. Compared to ReRAM-based DNN accelerators, REBOC achieves averagely 4.1× speedup and 2.6× energy reduction. 

As the model size of deep neural networks (DNNs) grows for better performance, the increase in computational cost associated with training and testing makes it extremely difficulty to deploy DNNs on end/edge devices with limited resources while also satisfying the response time requirement. To address this challenge, model compression which compresses model size and thus reduces computation cost is widely adopted in deep learning society. However, the practical impacts of hardware design are often ignored in these algorithm-level solutions, such as the increase of the random accesses to memory hierarchy and the constraints of memory capacity. On the other side, limited understanding about the computational needs at algorithm level may lead to unrealistic assumptions during the hardware designs. In this work, we will discuss this mismatch and provide how our approach addresses it through an interactive design practice across both software and hardware levels. 

The ending of Moore’s Law makes domain-specific architecture as the future of computing. The most representative is the emergence of various deep learning accelerators. Among the proposed solutions, resistive random access memory (ReRAM) based process-inmemory (PIM) architecture is anticipated as a promising candidate because ReRAM has the capability of both data storage and in-situ computation. However, we found that existing solutions are unable to efficiently support the computational needs required by the training of unsupervised generative adversarial networks (GANs), due to the lack of the following two features: 1) Computation efficiency: GAN utilizes a new operator, called transposed convolution. It inserts massive zeros in its input before a convolution operation, resulting in significant resource under-utilization; 2) Data traffic: The data intensive training process of GANs often incurs structural heavy data traffic as well as frequent massive data swaps. Our research follows the PIM strategy by leveraging the energy-efficiency of ReRAM arrays for vector-matrix multiplication to enhance the performance and energy efficiency. Specifically, we propose a novel computation deformation technique that can skip zero-insertions in transposed convolution for computation efficiency improvement. Moreover, we explore an efficient pipelined training procedure to reduce on-chip memory access. The implementation of related circuits and architecture is also discussed. At the end, we present our perspective on the future trend and opportunities of deep learning accelerators.